Conference

Ibrahim, N.H.A. Aziz, N.A.A. Aziz, S. Razali, M.I. Shapiai, S.W. Nawawi, M.S. Mohamad, “A Kalman Filter Approach for Solving Unimodal Optimization Problems”, The Tenth International Conference on Innovative Computing, Information and Control (ICICIC2015), Accepted, Dalian, China, 20-22 August 2015.

Zakaria, H., Hassan, R., Othman, R. M., Asmuni, H., & Shah, Z. A. (2014, September). A study of lightweight ontology for herb domain. In Software Engineering Conference (MySEC), 2014 8th Malaysian (pp. 268-272). IEEE.

T.W. Shi, K. Moorthy, M.S. Mohamad, S. Deris, S. Omatu, M. Yoshioka, “Random Forest and Gene Ontology for Functional Analysis of Microarray Data”, IEEE 7th International Workshop on Computational Intelligence and Applications (IWCIA 2014), pp. 29-34, IEEE Press, Hiroshima, Japan, 7-8 November 2014.

T.W. Soon, K. Moorthy, M.S. Mohamad, “Gene Selection on an Improved Iterative Feature Elimination Random Survival Forest”, The 46th International Symposium on Stochastic Systems Theory and Its Applications (SSS’ 14), Kyoto Institute of Technology, Japan, 1-2 November 2014.

Hussin, W. N. W., Hassan, A., Halim, A. H., & Zakaria, Z. (2014). Preliminary Work Towards Development of a Dynamic Job Shop Scheduling Model. In Advanced Materials Research (Vol. 845, pp. 682-686). Trans Tech Publications.

S.T. Low, L.E. Chai, M.S. Mohamad, S. Deris, S. Omatu, M. Yoshioka, “Inferring Gene Regulatory Networks from Perturbed Gene Expression Data Using a Dynamic Bayesian Network with a Markov Chain Monte Carlo Algorithm”, The 2014 IEEE International Conference on Granular Computing (GrC 2014), pp. 179-184, IEEE Press, Noboribetsu Grand Hotel, Hokkaido, Japan, 22-24 October 2014.

Samah, A.A., Wah, L.K., Desa, M.I., Majid, H.A., Azmi, N.F.M., Salleh, N., Bakar, A.A. and Manual, A., 2014, December. Decision Support System Using System Dynamics Simulation Modelling for Projection of Dentist Supply. In Computer Assisted System in Health (CASH), 2014 International Conference on (pp. 22-25). IEEE.

C.L. Koo, A.H.M. Salleh, M.S. Mohamad, S. Deris, S. Omatu, M. Yoshioka, “A Gene Knockout Strategy for Succinate Production Using a Hybrid Algorithm of Bees Algorithm and Minimization of Metabolic Adjustment”, The 2014 IEEE International Conference on Granular Computing (GrC 2014), pp. 131-136, IEEE Press, Noboribetsu Grand Hotel, Hokkaido, Japan, 22-24 October 2014.

M. Navarro, F. de la Prieta, G. Villarrubia, M.S. Mohamad, “Multiagent Application in Mobile Enviroments to Data Collection in Park Zones”, The 11th International Symposium on Distributed Computing and Artificial Intelligence (DCAI 11), vol. 290, pp. 251-259.Universiti of Salamanca, Spain, 4-6 June 2014.

Jani, N. H. M., Radzi, N. H. M., & Ngadiman, M. S. (2013, April). Ant colony optimization for solving university facility layout problem. In Proceedings of The 20th National Symposium On Mathematical Sciences: Research in Mathematical Sciences: A Catalyst for Creativity and Innovation (Vol. 1522, No. 1, pp. 1355-1359). AIP Publishing.

L.E. Chai, M.S.Mohamad, S.Deris, C.K. Chong, Y.W. Choon, “Modelling Gene Networks by a Dynamic Bayesian Network-based Model with Time Lag Estimation”, The First International Workshop on Data Analytics for Targeted Healthcare (DANTH 13), Gold Coast, Australia, 14-17 April 2013.

J.X. Yeoh, C.K. Chong, Y.W. Choon, L.E. Chai, M.S. Mohamad, S.Deris, R.M Illias, “Parameter Estimation Using Improved Differential Evolution (IDE) and Bacterial Foraging Algorithm to Model Tyrosine Production in Mus Musculus”, The First International Workshop on Data Analytics for Targeted Healthcare (DANTH 13), Gold Coast, Australia, 14-17 April 2013.

C.K. Chong, Y.W. Choon, L.E. Chai, M.S. Mohamad, S.Deris, S. Shamsir, “Theronine Biosynthesis Pathway Simulation Using IBMDE with Parameter Estimation”, The First International Workshop on Data Analytics for Targeted Healthcare (DANTH 13), Gold Coast, Australia, 14-17 April 2013.

K. Moorthy, M.S. Mohamad, S. Deris, “Multiclass Prediction for Cancer Microarray Data Using Various Variables Range Reduction Based on Random Forest”, The First International Workshop on Data Analytics for Targeted Healthcare (DANTH 13), Gold Coast, Australia, 14-17 April 2013.

M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka, “A Constraint and Rule in an Enhancement of Binary Particle Swarm Optimization to Select Informative Genes for Cancer Classification”, The First International Workshop on Data Analytics for Targeted Healthcare (DANTH 13), Gold Coast, Australia, 14-17 April 2013.

Y.W. Choon, C.K. Chong, L.E. Chai, M.S. Mohamad, S.Deris, R.M Illias, “Identifying Gene Knockout Strategy Using Bees Hill Flux Balance Analysis (BHFBA) for Improving the Production of Succinic Acid and Glycerol in Saccharomyces cerevisiae”, The First International Workshop on Data Analytics for Targeted Healthcare (DANTH 13), Gold Coast, Australia, 14-17 April 2013.

M.F. Misman, W.H. Chan, M.S. Mohamad, S.Deris, “A Hybrid of SVM and SCAD with Group-specific Tuning Parameters in Identification of Informative Genes and Biological Pathways”, The First International Workshop on Data Analytics for Targeted Healthcare (DANTH 13), Gold Coast, Australia, 14-17 April 2013.

L.E. Chai, M.S. Mohamad, S.Deris, C.K. Chong, Y.W. Choon,“Inferring E. coli SOS Response Pathway from Gene Expression Data Using IST-DBN with Time Lag Estimation”, International Symposium on Biomedical Data Infrastructure (BDI 2013), University of Malaya, Kuala Lumpur, Malaysia, 27-28February 2013.

N.F. Saidin, C.K Chong, Y.W. Choon, L.E. Chai, S. Deris, R.M. Illias, M.S Shamsir, M.S. Mohamad, “Using Ant Colony Optimization (ACO) on Kinetic Modeling of the Acetoin Production in Lactococcus Lactis C7”, International Symposium on Biomedical Data Infrastructure (BDI 2013), University of Malaya, Kuala Lumpur, Malaysia, 27-28February 2013.

S.T. Ng, C.K. Chong, Y.W. Choon, L.E. Chai, S. Deris, R.M. Illias, M.S. Shamsir, M.S. Mohamad, “Using Particle Swarm Optimization for Estimating Kinetics Parameters on Essential Amino Acid Production of Arabidopsis Thaliana”, International Symposium on Biomedical Data Infrastructure (BDI 2013), University of Malaya, Kuala Lumpur, Malaysia, 27-28February 2013.

M.A. Mutalib, L.E. Chai, C.K. Chong, Y.W. Choon, S. Deris, R.M. Illias, M.S. Mohamad, “Inferring Gene Networks from Gene Expression Data Using Dynamic Bayesian Network with Different Scoring Metric Approaches”, International Symposium on Biomedical Data Infrastructure (BDI 2013), University of Malaya, Kuala Lumpur, Malaysia, 27-28February 2013.

L.H. Yin, Y.W. Choon, L.E. Chai, C.K. Chong, S. Deris, R.M. Illias, M.S. Mohamad, “Prediction of Vanillin Production in Yeast Using a Hybrid of Continuous Bees Algorithm and Flux Balance Analysis (CBAFBA)”, International Symposium on Biomedical Data Infrastructure (BDI 2013), University of Malaya, Kuala Lumpur, Malaysia, 27-28February 2013.

Y.W. Choon, M.S. Mohamad, S. Deris, R.M. Illias, L.E. Chai, C.K. Chong, “Identifying Gene Knockout Strategy Using Bees Hill Flux Balance Analysis (BHFBA) for Improving the Production of Ethanol in Bacillus Subtilis”, International Symposium on Biomedical Data Infrastructure (BDI 2013), University of Malaya, Kuala Lumpur, Malaysia, 27-28February 2013.

S.S. Lee, Y.W. Choon, L.E. Chai, C.K. Chong, S. Deris, R.M. Illias, M.S. Mohamad, “A Hybrid of Artificial Bee Colony and Flux Balance Analysis for Identifying Optimum Knockout Strategies for Producing High Yields of Lactate inEcherichia Coli”, International Symposium on Biomedical Data Infrastructure (BDI 2013), University of Malaya, Kuala Lumpur, Malaysia,27-28February 2013.

Y.W. Choon, M.S. Mohamad, S. Deris, R.M. Illias, L. E. Chai, “Using Bees Hill Flux Balance Analysis (BHFBA) for in silico Microbial Strain Optimization”, The 5th Asian Conference on Intelligent Information and Database Systems (ACIIDS 2013), Istana Hotel,Kuala Lumpur, Malaysia, 18-20 March, 2013.

K. Moorthy, M.S. Mohamad, S. Deris, “Multiple Gene Sets for Cancer Classification Using Gene Range Selection Based on Random Forest”, The 5th Asian Conference on Intelligent Information and Database Systems (ACIIDS 2013), Istana Hotel,Kuala Lumpur, Malaysia, 18–20 March, 2013.

A.H.M. Salleh, M.S. Mohamad, S. Deris, R.M. Illias, “Identifying Minimal Genomes and Essential Genes in Metabolic Model Using Flux Balance Analysis”, The 5th Asian Conference on Intelligent Information and Database Systems (ACIIDS 2013), Istana Hotel,Kuala Lumpur, Malaysia, 18-20 March, 2013.

Samah, A. A., Yusoff, S. N. M., Zainudin, Z., & Majid, H. A. (2012, February). A Study on Rostering On-call Doctor Using Genetic Algorithm with Enhanced Genetic Operator. In 2012 Third International Conference on Intelligent Systems Modelling and Simulation (pp. 126-130). IEEE.

N. Habibi, S.Z.M. Hashim, C. A. Rodriguez, M.S. Mohamad, S.Deris, “The Emerging Field of Synthetic Biology: a Review”, 2012 4th International Conference on Intelligent and Advanced Systems (ICIAS2012), Kuala Lumpur Convention Centre, 12–14 June, 2012.

Y.W. Choon, M.S. Mohamad, S. Deris, C.K. Chong, L.E. Chai, “Gene Knockout Strategies Identification by using a Hybrid of Bees Algorithm and Flux Balance Analysis for Optimizing Microbial Strains”, Universiti Malaysia Terengganu 11th International Annual Symposium on Sustainability Science and Management (UMTAS 2012), Universiti Malaysia Terengganu, Malaysia, 9-11 July 2012.

C.K. Chong, M.S. Mohamad, S. Deris, M.S. Shamsir, Y.W. Choon, L.E. Chai, “Aspartate Biosynthesis Pathway Simulation using an Improved Differential Evolution Algorithm through Parameter Estimation”, Universiti Malaysia Terengganu 11th International Annual Symposium on Sustainability Science and Management (UMTAS 2012), Universiti Malaysia Terengganu, Malaysia, 9-11 July 2012.

L.E. Chai, M.S. Mohamad, S. Deris, Y.W. Choon, and C.K. Chong, “Using a Dynamic Bayesian Network-based Model for Inference of Escherichia coliSOS Response Pathway from Gene Expression Data”, Universiti Malaysia Terengganu 11th International Annual Symposium on Sustainability Science and Management (UMTAS 2012), Universiti Malaysia Terengganu, Malaysia, 9-11 July 2012.

Abdullah, S. Deris, M.S. Mohamad, S.Z.M. Hashim, “A New Hybrid Firefly Algorithm for Complex and Nonlinear Problem”, The 9th International Symposium on Distributed Computing and Artificial Intelligence (DCAI 2012), University of Salamanca, Spain, 28-30 March 2012.

Y.W. Choon, M.S. Mohamad, S. Deris, C.K. Chong, L.E. Chai, Z. Ibrahim, S. Omatu, “Identifying Gene Knockout Strategies Using a Hybrid of Bees Algorithm and Flux Balance Analysis for in silico Optimization of Microbial Strains”, The 9th International Symposium on Distributed Computing and Artificial Intelligence (DCAI 2012), University of Salamanca, Spain, 28-30 March 2012.

C.K. Chong, M.S. Mohamad, S. Deris, M.S. Shamsir, A. Abdullah, Y.W. Choon, L.E. Chai, S. Omatu, “Using an Improved Differential Evolution Algorithm for Parameter Estimation to Simulate Glycolysis Pathway”, The 9th International Symposium on Distributed Computing and Artificial Intelligence (DCAI 2012), University of Salamanca, Spain, 28-30 March 2012.

L.E. Chai, M.S. Mohamad, S. Deris, C.K. Chong, Y.W. Choon, Z. Ibrahim, S. Omatu, “Inferring Gene Regulatory Networks from Gene Expression Data by a Dynamic Bayesian Network-based Model”, The 9th International Symposium on Distributed Computing and Artificial Intelligence (DCAI 2012), University of Salamanca, Spain, 28-30 March 2012.

M.F. Misman, M.S. Mohamad, S. Deris, R.N.M.R. Mohamad, S.Z.M. Hashim, S. Omatu, “A Hybrid of SVM and SCAD with Group-specific Tuning Parameter for Pathway-based Microarray Analysis”, The 9th International Symposium on Distributed Computing and Artificial Intelligence (DCAI 2012), University of Salamanca, Spain, 28-30 March 2012.

Mohd Saberi Mohamad, Rosli Md Illias, Afnizanfaisal Abdullah, Safaai Deris and Nor Muhammad Mahadi, “Computational Biology for Cancer and Microbial Cell Factory Researches”, EU‐ASEAN Scientific Workshop on Computational Biology, Malaysian Genome Institute & Equatorial Hotel Bangi, Malaysia, 28-29 November 2011.

Afnizanfaizal Abdullah, Safaai Deris, Siti Zaiton Mohd Hashim, Mohd Saberi Mohamad and Satya Nanda Vel Arjunan, “An Improved Local Best Searching in Particle Swarm Optimization using Differential Evolution”, The eleventh International Conference on Hybrid Intelligent Systems (HIS2011), Melaka, Malaysia, pp. 115-120. 5-8 December 2011.

Yusoff, Y., Ngadiman, M.S. and Zain, A.M., 2011. Overview of NSGA-II for optimizing machining process parameters. Procedia Engineering, 15, pp.3978-3983.

Muhammad Faiz Misman, Mohd Saberi Mohamad, Safaai Deris, Siti Zaiton Mohd Hashim, Nurdyana Leham and Zuwairie Ibrahim, “A Tuning Parameter Selector Method for the gSVM-SCAD in Determining Significant Genes and Biological Pathways”, The Sixth International Conference on Innovative Computing, Information and Control (ICICIC2011), 851-856. Kitakyushu, Japan, 22-24 December 2011.

K. Moorthy, M.S. Mohamad, S. Deris and Z. Ibrahim, “Multivariate Analysis of Gene Expression Data and Missing Value Imputation Based on LLSimpute Algorithms”, The Sixth International Conference on Innovative Computing, Information and Control (ICICIC2011), pp. 1335-1339. Kitakyushu, Japan, 22-24 December, 2011.

C.H. Shi, M.S. Mohamad S. Deris, Z. Ibrahim, “A Pathway-based Approach for Analysing Microarray Data using Random Forests”, The Sixth International Conference on Innovative Computing, Information and Control (ICICIC2011), pp. 1253-11257. Kitakyushu, Japan, 22-24 December, 2011.

W.H. Chan, M.S. Mohamad, “Prediction of Protein Residue Contact Using Support Vector Machine”, The 3rd Malaysian Joint Conference on Artificial Intelligence (MJCAI 2011), pp.107-116, Putrajaya, Malaysia, 20-22 July 2011.

ChinYin Fai, Rohayanti Hassan, and Mohd Saberi Mohamad, “Optimized Local Protein Structure with Support Vector Machine to Predict Protein Secondary Structure”, The 3rd Malaysian Joint Conference on Artificial Intelligence (MJCAI 2011), pp. 117-126, Putrajaya, Malaysia, 20-22 July 2011.

Abdul Hakim Mohamed Salleh and Mohd Saberi Mohamad, “Identifying Metabolic Pathway within Microarray Gene Expression Data Using Combination of Probabilistic Models”, The 3rd Malaysian Joint Conference on Artificial Intelligence (MJCAI 2011), pp.131-140, Putrajaya, Malaysia, 20-22 July 2011.

C.K. Chong, M.S. Mohamad, S. Deris, Y.W. Choon, L.E. Chai, “Parameter Estimation for Simulation of Glycolysis Pathway by Using an Improved Differential Evolution”, The 3rd Malaysian Joint Conference on Artificial Intelligence (MJCAI 2011), pp. 127-130, Putrajaya, Malaysia, 20-22 July 2011.

K. Moorthy and M.S. Mohamad, “Random Forest for Gene Selection and Microarray Data Classification”, The 3rd Malaysian Joint Conference on Artificial Intelligence (MJCAI 2011), pp. 97-106. Putrajaya, Malaysia, 20-22 July 2011.

Ismail Ibrahim, Syed Abdul Rahman Syed Abu Bakar, Musa Mohd Mokji, Kamal Khalil, Zulkifli Md Yusof, Jameel Abdulla Ahmed Mukred, Zuwairie Ibrahim, Mohd Saberi Mohamad and Wan Khairunizam Wan Ahmad, “Performance Measurement of Thresholding Algorithms in Printed Circuit Board Inspection System”, The 2011 Third International Conference on Computational Intelligence, Modelling & Simulation (CIMSim 2011), pp. 242-247. Langkawi, Malaysia, 20-22 September 2011.

Ismail Ibrahim, Syed Abdul Rahman Syed Abu Bakar, Musa Mohd Mokji, Kamal Khalil, Zulkifli Md Yusof, Jameel Abdulla Ahmed Mukred, Mohd Saberi Mohamad, Zuwairie Ibrahim, “A Printed Circuit Board Inspection Systemwith Defect Classification Capability”, The Second International Symposium on Innovative Management, Information and Production (IMIP2011), pp. 331-336. Otaru, Japan, 8-10 October 2011.

Zulkifli Md Yusof, Amar Faiz Zainal Abidin, Asrul Adam, Kamal Khalil, Jameel Abdulla Ahmed Mukred, Mohd Saberi Mohamad, Zuwairie Ibrahim, “A Two-Step Binary Particle Swarm Optimization Approach for Routing in VLSI”, The 6th International Conference on Innovative Computing, Information and Control (ICICIC2011), pp. 771-776. Kitakyushu, Japan, 22-24 December 2011.

Ismail Ibrahim, Syed Abdul Rahman Syed Abu Bakar, Musa Mohd Mokji, Kamal Khalil, Zulkifli Md Yusof, Jameel Abdulla Ahmed Mukred, Mohd Saberi Mohamad, Zuwairie Ibrahim, “An Image Registration Technique to Enhance PCB Inspection Algorithm with Real Images”, The 6th International Conference on Innovative Computing, Information and Control (ICICIC2011), pp. 717-5-722. Kitakyushu, Japan, 22-24 December 2011.

Mohd Ibrahim Shapiai, Zuwairie Ibrahim, Shahdan Sudin, Mohd Saberi Mohamad, Marzuki Khalid, “Investigation on Different Learning Techniques for Weighted Kernel Regression in Solving Small Sample Problem”, The 6th International Conference on Innovative Computing, Information and Control (ICICIC2011), pp. 705-710. Kitakyushu, Japan, 22-24 December 2011.

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka (2010), “Selecting Informative Genes from Microarray Data by Using a Cyclic GA-based Method”, The 1st International Conference on Intelligent Systems, Modelling and Simulation, pp. 15-20. Liverpool, UK, 27-29 January 2010. Indexed by SCOPUS.

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka (2010), “A Three-Stage Method to Select Informative Genes from Gene Expression Data in Classifying Cancer Classes”, The 1st International Conference on Intelligent Systems, Modelling and Simulation, pp. 159-173. Liverpool, UK, 27-29 January 2010. Indexed by SCOPUS.

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “Selecting Genes from Gene Expression Data by Using an Enhancement of Binary Particle Swarm Optimization for Cancer Classification”, The 2nd International Conference on Agents and Artificial Intelligence (ICAART2010), pp. 82-89, Valencia, Spain, 22-24 January 2010.

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka (2010),” Particle Swarm Optimization with a Modified Sigmoid Function for Gene Selection from Gene Expression Data”, The 15th International Symposium on Artificial Life and Robotics (AROB 15th ’10), pp. 646-649, Oita, Japan, 4-6 February 2010.

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka (2010), “Informative Gene for Cancer Classification by Using Particle Swarm Optimization”, The 15th International Symposium on Artificial Life and Robotics (AROB 15th ’10), pp. 650-653, Oita, Japan, 4-6 February 2010.

Jafar R., Safaai D., Parvizpour S. (2009), “Text-Based Protein Structure Modeling for Structure Comparison”, 2009 International Conference of Soft Computing and Pattern Recognition (SOCPAR’09), 490-497 (Best Paper Award)

Shahreen K., Safaai D., Razib M. O., Zuraini A. S., Rohayanti H. (2009), “Gene ontology based biclustering in gene expression data”, 3rd International Conference on Chemical and BioProcess Engineering (ICCBPE-2009), Kota Kinabalu, Malaysia, 12-14 Aug 2009, A-3.

Misman, M.F., Deris, S., Hashim, S.Z.M., Jumali, R., Mohamad, M.S. (2009), “Pathway-based microarray analysis for defining statistical significant phenotype-related pathways: A review of common approaches”, Proceedings – 2009 International Conference on Information Management and Engineering, ICIME 2009, art. no. 5077084, 496-500

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “Particle Swarm Optimization for Gene Selection Using Microarray Data”, The 2009 International Conference on Multimedia, Information Technology and its Applications (MITA2009), pp. 37-40, Osaka, Japan, 19-21 August 2009.

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “An Iterative GASVM-based Method: Gene Selection and Classification of Microarray Data”, The 2009 International Symposium on Distributed Computing and Artificial Intelligence (DCAI’09), Salamanca, Spain, 10-12 June 2009.

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, Michifumi Yoshioka, and Anazida Zainal, “An improved Binary Particle Swarm Optimisation for Gene Selection in Classifying Cancer Classes”, The 2009 International Symposium on Distributed Computing and Artificial Intelligence (DCAI’09), Salamanca, Spain, 10-12 June 2009.

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “Particle Swarm Optimization for Gene Selection in Classifying Cancer Classes”, The 14th International Symposium on Artificial Life and Robotics (AROB 14th ’09), pp. 762-765, Oita, Japan, 5-7 February 2009.

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “Gene Subset Selection Using an Iterative Approach Based on Genetic Algorithms”, The 14th International Symposium on Artificial Life and Robotics (AROB 14th ’09), pp. 758-761, Oita, Japan, 5-7 February 2009

Jumali, R., Deris, S., Hashim, S.Z.M., Misman, M.F., Mohamad, M.S. (2009), “A study of network-based approach for cancer classification”, Proceedings – 2009 International Conference on Information Management and Engineering, ICIME 2009, art. no. 5077086, 505-509

Shahliza A.H., Dayang N.A.J, and Safaai D., (2009) “Requirements Identification and Representation in Software Product Line”, Asia Pacific Software Engineering Conference. Pulau Pinang. December 2009.

Afnizanfaizal A., Safaai D., Siti Zaiton M.H. and Hamimah M.J. (2009), “Graph Partitioning Method for Functional Module Detections of Protein Interaction Network”, 2009 International Conference on Computer Technology and Development (ICCTD 2009), Kota Kinabalu, Sabah, 12-15 November 2009, pp.230-235

Zuraini A. S., Puteh S., Razib M.O. (2009), “Feature Selection and Classification of Gene Expression Data”, 5th Post-Graduate Annual Research Seminars(PARS’09), FSKSM, UTM Skudai, 15-19 June 2009, Page 89-93

Zuraini A. S., Puteh S. (2009), A Comparative Study on Feature Ranking Filter Methods for Feature Selection”, 1st Malaysian Joint Conference on Artificial Intelligence (MJCAI 2009), Kuala Lumpur, Malaysia, 14-16 July 2009, Page 88-97

Zuraini A. S., Puteh S. (2009), “Genetic Algorithm Based Feature Selection and Unbiased Protocol for Classification of Breast Cancer Datasets”, 5th International Conference on Information & Communication Technology and Systems (ICTS’09), 4 August 2009. Surabaya, Indonesia, Page 179-183

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, Muhammad Faiz Misman (2008). “A Multi-objective Strategy in Genetic Algorithm for Gene Selection of Gene Expression Data”. The 13th International Symposium on Artificial Life and Robotics (AROB 13th ’08). January 31-February 2, 2008. Oita, Japan.

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, Siti Zaiton Mohd Hashim (2008). “A Model for Gene Selection and Classification of Gene Expression Data”. The 13th International Symposium on Artificial Life and Robotics (AROB 13th ’08). January 31-February 2, 2008. Oita, Japan

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, Muhammad Faiz Misman (2008). “Selecting Informative Genes from Microarray Data by using a Hybrid Algorithm for Cancer Classification”. The 13th International Symposium on Artificial Life and Robotics (AROB 13th ’08). January 31-February 2, 2008. Oita, Japan.

Al-Mutaz,M.A., Deris,S., Mustafa,N.Z., Ghoneim.  And Doaa M. (2007) “Breast cancer detection based on statistical textural features classification”, In 4th International Innovations in Information Technology, Dubai, UAE.

Mohd Saberi Mohamad, Sigeru Omatu, Michifumi Yoshioka, and Safaai Deris, “A Three-Stage Method to Select Informative Genes for Cancer Classification”, The 40th ISCIE International Symposium on Stochastic Systems Theory and Its Applications (SSS’08), Kyoto, Japan, 14-15 November 2008.

Mohd Saberi Mohamad, Sigeru Omatu, Michifumi Yoshioka, and Safaai Deris, “A Two-Stage Method to Select a Smaller Subset of Informative Genes for Cancer Classification”, The 2008 International Symposium on Intelligent Informatics (ISII2008), Kumamoto, Japan, 12-13 December 2008.

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “A Recursive Genetic Algorithm to Automatically Select Genes for Cancer Classification”, The 2nd International Workshop on Practical Applications of Computational Biology & Bioinformatics (IWPACBB’08), Salamanca, Spain, 22-24 October 2008.

Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “Multi-Objective Optimization Using Genetic Algorithm for Gene Selection from Microarray Data”, The International Conference on Computer and Communication Engineering 2008 (ICCCE’08), pp. 1331-1334, Kuala Lumpur, Malaysia, 13-15 May 2008.

Mohd Saberi Mohamad, Sigeru Omatu, Michifumi Yoshioka, and Safaai Deris, “An Approach Using Hybrid Methods to Select Informative Genes from Microarray Data for Cancer Classification”, The 2nd Asia International Conference on Modelling & Simulation 2008 (AMS2008), pp. 603-608, Kuala Lumpur, Malaysia, 13-15 May 2008.

Mustafa,N.Z., Deris,S. and Alwahaishi,S. (2007) “SubSS: A protein-protein interaction detection tool”, In the 6th IEEE/ACIS International Conference on Computer and Information Science, Melbourne, Australia.

Halim,A.S., Jawawi,A.D.N and Deris,S. (2006) “Synergy between generative reuse and software product line”. In The 2nd Malaysian Software Engineering Conference, Kuala Lumpur, Malaysia.

Alashwal,A.H.T., Deris,S., Othman,M.R. and Mohamad,M.S. (2006) “One-class classifier to predict protein-protein interactions based on hydrophobicity properties”. In the International Symposium on Biomedical Engineering, Bangkok, Thailand.

Alashwal, A.H.T., Deris,S., and Othman,M.R. (2006). “Predicting proteins interactions from protein sequence features using support vector machines”. In the International Conference on Bioinformatics & Computational Biology, Las   Vegas, Nevada, USA.

Alashwal,A.H.T., Deris,S. and Othman,M.R. (2006). “Predicting protein-protein interactions as a one-class classification problem”. In FSKSM Postgraduate Annual Research Seminar, UTM, Johor Bahru.

Alashwal,A.H.T., Deris,S. and Othman,M.R. (2006). “Support vector machines for predicting protein-protein interactions using domains and hydrophobicity features”. In the International Conference on Computing and Informatics, Kuala   Lumpur, Malaysia.

Asmuni, H., Burke, E.K., Garibaldi,J.M. and McCollum,B. (2006) “A novel fuzzy approach to evaluate the quality of examination timetabling”, In the 6th International Conference on the Practice and Theory of Automated Timetabling,   Brno,  Czech Republic.

Jawawi,A.D.N., Deris,S. and Mamat,R. (2006) “Temporal modeling approach for schedulability analysis in component-based development”, In Third Real-time Technology and Applications Symposium, UPM, Kuala Lumpur.

Jawawi,A.D.N., Deris,S., Mamat R. and Mohamad,R. (2006) “A component oriented programming framework for developing embedded mobile robot software using PECOS model”, In 2nd Malaysian Software Engineering Conference, Kuala Lumpur.

Jawawi,A.D.N. and Deris,S. (2006) “An approach for predictable real-time software in component-based software development of autonomous mobile robot systems”, In FSKSM Postgraduate Annual Research Seminar, UTM, Johor Bahru.

Mohamad,M.S., Deris,S. and Hashim,S.Z.M. (2006) “Gene selection from gene expression data using a hybrid approach for cancer classification”, In the 3rd International Conference on Artificial Intelligence in Engineering and   Technology, Universiti Malaysia Sabah.

Mohd Saberi Mohamad, Safaai Deris, Siti Zaiton Mohd Hashim (2006). “Gene Selection from Gene Expression Data using Genetic Algorithm for Cancer Classification”. The 3rd International Conference on Artificial Intelligence in Engineering and Technology (ICAIET2006). November 22- 24, 2006. Sabah, Malaysia.

Mohamad,R., Deris,S. and Ammar,H.H. (2006) “Agent design patterns framework for MaSE/POAD methodology”, In the 4th. ACS/IEEE International Conference on Computer System and Application, Dubai/Sharjah, UAE.

Mohamad,R. Deris,S. and Ammar,H.H. (2006) “A process framework of the pattern-oriented design for multi-agent systems”, In FSKSM Post Graduate Seminar, UTM, Johor Bahru.

Mohamad,R., Deris,S. and Ammar,H.H. (2006) “Engineering Jadex agents using MaSE methodology”, In the 2nd. Malaysian Software Engineering Conference, Kuala Lumpur, Malaysia.

Jawawi,A.D.N., Deris,S. and Mamat,R. (2006) “Enhancements of PECOS embedded real-time component model for  autonomous mobile robot application”, In the The 4th ACS/IEEE International Conference on Computer Systems   and Applications, Dubai.

Abdalla,S.O. and Deris,S. (2005) “An improved method for protein secondary structure prediction by combining neural networks and GOR V theory”. In the 2nd Middle East Conference on Healthcare Informatics. Dubai Knowledge Village, Dubai, UAE.

Alashwal,H.T.A. and Deris,S. (2005). “Computational prediction of protein-protein interactions based on protein domain structure and hydrophobic properties”. In the International Symposium on Bio-Inspired Computing. Johor, Malaysia.

Asmuni,H., Burke,E.K. and Garibaldi,J.M. (2005) “Fuzzy multiple heuristic orderings for course timetabling problem”, In Proceedings of the 5th United Kingdom Workshop on Computational Intelligence, London, UK.

Deris,S., Alashwal,H.T.A., Mohamad,M.S., Chin,Y.L., Othman,M.R., Zakaria,Y., Zainudin,S., Mustafa,N.Z., Abdalla,S.A. and Arjunan,V.S.N. (2005) “Bioinformatics: A tool for bio-knowledge generation”, In the International Conference on Information Technology and Multimedia, Cyberjaya, Malaysia.

Jalil,R.A., Salim,N. and Othman,M.R. (2005) “Empirical determination of effective substitution matrices and affine gap penalties for sequence alignment”, In the International Symposium on Bio-Inspired Computing, Johor Bahru, Malaysia.

Jawawi,A.D.N. and Deris,S. (2005) “Experience in adopting an embedded real-time component model in autonomous mobile robot software design”, In FSKSM Postgraduate Annual Research Seminar, UTM, Johor Bahru.

Jawawi,A.D.N., Mohamad,R., Deris,S. and Mamat,R. (2005). “Transforming pattern-oriented models into component-based models for embedded real-time software development”, 1st Malaysian Software Engineering Conference, Penang.

Mohd Saberi Mohamad, Safaai Deris, Muhammad Razib Othman, Rosli Md Illias, Saad Osman Abdalla (2005). “Applying Filter Approach and Genetic Algorithm Wrapper for Gene Selection from Gene Expression Data”. The International Symposium on Bio-Inspired Computing (BIC’05). September 5-7, 2005. Johor Bharu, Malaysia.

Mohamad,R. Deris,S. and Ammar,H.H. (2005) “Designing a multi-agent system as a composition of design patterns using MaSE/POAD methodology”, International Advanced Technology Congress, IOI Marriott Hotel, Putrajaya.

Mohamad,R. Deris,S. and Ammar,H.H. (2005) “Towards a reusable and maintainable multiagent system engineering (MaSE) methodology”, In International Conference on Artificial Intelligence, Nevada, USA.

Mohamad,R. Deris,S. and Ammar,H.H. (2005) “Formalizing the pattern-oriented analysis and design (POAD) model using object-Z”, In the 1st Malaysian Software Engineering Conference, Penang.

Mohamad,R. Deris,S. and Ammar,H.H. (2005) “On the use of patterns in multiagent system engineering (MaSE) methodology”, In FSKSM Post Graduate Seminar, UTM, Johor Bahru.

Zainuddin,S. and Deris,S. (2005) “From gene expression to gene network: A review of techniques”. International Symposium on Bio-Inspired Computing, Johor Bahru, Malaysia.

Asmuni,H., Burke,E.K. and Garibaldi,J.M. (2004) “Fuzzy multiple ordering criteria for examination timetabling”, In the 5th International Conference on the Practice and Theory of Automated Timetabling, Pittsburgh, USA.

Asmuni,H., Burke,E.K. and Garibaldi,J.M. (2004) “A comparison of fuzzy and non-fuzzy ordering heuristics for examination timetabling”, In the 5th International Conference on Recent Advances in Soft Computing, Nottingham, UK, 288-293.

Chin,Y.L. and Deris,S. (2004) “Combining clustering and statistical methods for gene selection in microarray classification problem”, Seminar Nasional Teknologi Informasi, University Tarumanagara, Jakarta.

Chin,Y.L. and Deris,S. (2004) “Improve gene selection techniques by combining Model-Based clustering and statistical methods for classification of microarray gene expression data”, In International Conference on Bioinformatics, Auckland, New Zealand.

Mohammad,M.S. and Deris,S. (2004) “Feature selection method using genetic algorithm for classification of small and high dimension data”, In International Symposium on Information and Communication Technologies, Putrajaya, KL.

Mohammad,M.S. and Deris,S. (2004) “Genetic algorithm wrapper approach to select informative gene for gene expression microarray data using support vector machine”, In International Conference on Bioinformatics 2004, Auckland, New Zealand.

Arjunan,V.S.N., Deris,S., Illias,R.M. and Mohamad,M.S. (2003) “Distributed data partitioning interface for homogeneous clusters in protein secondary structure prediction”, In Aerospace, Information Technology and Communications Seminar, Johor Bahru, Malaysia.

Jawawi,A.D.N., Mohamad,R., Deris,S. and Mamat,R. (2003) “A hybrid software engineering methodology for small-scale embedded firmware development”, In Conference on Intelligent Systems and Robotics, Putrajaya Marriott Hotel, IOI Resort, KL.

Mohamad,R., Jawawi,A.D.N., Deris,S. and Mamat,R (2003) “A review of formal method techniques for specifying a wall-climbing robot control firmware requirement”, Conference on Intelligent Systems and Robotics, Putrajaya Marriott Hotel, IOI Resort, KL.

Norwawi,N.M., Mahamud,K.R.K. and Deris,S. (2003) “Temporal classifier algorithm for time series data in R. Akerkar (ed) ”, In the Artificial Intelligence and Its Application, Technomathematics Research Foundation, Kolhapur, India.

Norwawi,N.M., Mahamud,K.R.K. and Deris,S.  (2003) “Towards a naturalistic agent with temporal data mining”. In Proceedings of the 3rd International Symposium on Information Technology, Kuala Lumpur.

Norwawi,N.M., Mahamud,K.R.K. and Deris,S. (2003) “Recognition-primed decision model using temporal data mining”. In the 3rd International Symposium on Communications and Information Technology, IEEE Thailand Section, Songkhla, Thailand.

Norwawi,N.M., Mahamud,K.R.K. and Deris,S. (2003) “Mining decision rules from temporal data”. In Malaysia-Japan Seminar on Artificial Intelligence Applications in Industry, Centre of Artificial Intelligence and Robotics (CAIRO), UTM, Johor.

Satya N. V. Arjunan, Safaai Deris, Rosli Md Illias, Mohd Saberi Mohamad, Azmee Awang (2003). “Predicting Protein Secondary Structure with Neural Network and Dempster-Shafer Theory”. The 2nd International Conference on Bioinformatics (InCoB’03). September 8-10, 2003. Penang, Malaysia.

Satya N. V. Arjunan, Safaai Deris, Rosli Md Illias, Mohd Saberi Mohamad. (2003). “A Parallelizing Interface for K-Means Type Clustering Algorithms and Neural Network Batch Training”. Seminar on Artificial Intelligence Applications in Industry (AIAI’03). June 24-25, 2003. Kuala Lumpur, Malaysia.

Safaai Deris, Muhamad Razib Othman, Hasliza Mamat, Mohd Saberi Mohamad. (2003). “Intelligent Hybrid Algorithm using Constraint-Based Reasoning and Genetic Algorithm For Nurse Scheduling”. Aerospace, Information Technology, and Communications Seminar (SEMASITT’03). May 7, 2003. Johore Bahru, Malaysia.

Mohd Saberi Mohamad, Safaai Deris & Siti Zaiton Mohd Hashim. “Selecting Informative Genes from Leukemia Gene Expression Data Using a Hybrid Approach for Cancer Classification”. International Conference on Biomedical Engineering (BIOMED2006), pp. 528-532. Dec 11-14, 2006. Kuala Lumpur, Malaysia.

Arjunan,V.S.N. and Deris,S. (2002) “Protein secondary structure prediction based on denoeux belief neural network”, In Proceeding of International Conference on Artificial Intelligence in Engineering and Technology, Kota Kinabalu, Sabah.

Saad,P. Deris,S., Mohamad,D. and Shamsuddin,S.M. (2002) “Complex image recognistion based on descretized and descretized features: A comparison”, In Proceeding of International Conference on Artificial Intelligence in Engineering and Technology, Kota Kinabalu, Sabah.

Salleh,N.A. and Deris,S. (2002) “Mobile retrieval agent in distributed information management”, In Proceeding of International Conference on Artificial Intelligence in Engineering and Technology, Kota Kinabalu, Sabah.

Deris,S., Omatu,S., Ohta,H., Sulong,G., Shuaib,I.L. and Saad,P. (1998) “Staff scheduling by a hybrid of genetic algorithms and constraint-based reasoning”, In the 7th JSPS-VCC Seminar on Integrated Engineering, Universiti Malaya, Kuala Lumpur.

Kamaruddin,S.S., Saad,P. and Deris,S. (1998) “A data-mining tool for a digital library application”, In International Conference on Information Technology and Multimedia, Universiti Tenaga National (UNITEN), Selangor.

Saad,P., Mohamed,D., Deris,S. and Kamaruddin,S.S. (1998) “Trademark image clustering technique using self-organising map”, In International Conference on Information Technology and Multimedia, Universiti Tenaga National (UNITEN), Selangor.

Samat,P.A., Deris,S. and Saad,P. (1998) “Enhancement of ship availability by improving chromosome representation”, In International Conference on Information Technology and Multimedia, Universiti Tenaga National (UNITEN), Selangor.

Deris,S., Omatu,S., Ohta,H., Kutar,L.C.S. and Samat,P. (1997) “Application of hybrid genetic algorithm to ship maintenance scheduling”, In the IFAC/IEEE International Symposium on Artificial Intelligence in Real-Time Control, Kuala Lumpur.

Deris,S., Omatu,S., Ohta,H., and Saad,P. (1997) “A constraint-directed genetic algorithm for university timetable planning”, In the 4th International Conference on Neural Information Processing, Dunedin, New Zealand.

Deris,S. and Omatu,S. (1996) “Stabilization of inverted pendulum by the genetic algorithm”, In Proceeding of the Emerging Technologies and Factory Automation, Kauai, USA.

Deris,S., Omatu,S. and Kitagawa,K. (1995) “Stabilization of inverted pendulum by the genetic algorithms”, In Proceeding of the IEEE Conference of Systems, Cybernatics and Machine, Vancouver, Kanada.

Deris,S. and Omatu,S. (1994) “A knowledge-based system for course planning and scheduling”, In Proceeding of the 5th JSPS-VCC Seminar on Integrated Engineering, Johor Bahru, Johor.

Deris,S., Samik,M.N, Sabtu,M. and Ahmad,F. (1990) “Application of expert system for soil crop suitability identification and classification in department of agriculture”, In Proceeding of the International Conference on Information Technology, Kuala Lumpur.

Deris,S. and Ohta,H. (1989) “Fuzzy expert system for identification and classification jobs”, In Proceeding of the Third International IFIT Conference on Computer Applications in Production and Engineering, Tokyo, Japan.